J3_8IFE_026

3D structure

PDB id

8IFE (explore in PDB, NAKB, or RNA 3D Hub)

Description

Arbekacin-added human 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.57 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8IFE|1|1A|C|704, 8IFE|1|1A|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IFE|1|1A|C|451
8IFE|1|1A|A|452
8IFE|1|1A|G|453
8IFE|1|1A|U|454
8IFE|1|1A|C|455
*
8IFE|1|1A|G|701
8IFE|1|1A|U|702
8IFE|1|1A|G|703
8IFE|1|1A|C|704
8IFE|1|1A|G|705
*
8IFE|1|1A|C|1292
8IFE|1|1A|G|1293
8IFE|1|1A|A|1294
8IFE|1|1A|C|1295
8IFE|1|1A|G|1296

Current chains

Chain 1A

28S ribosomal RNA

Nearby chains

Chain 1H

60S ribosomal protein L6

Chain 2Y

60S ribosomal protein L32

Chain 2Z

60S ribosomal protein L35a