J3_8IFE_030
3D structure
- PDB id
- 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Arbekacin-added human 80S ribosome
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.57 Å
Loop
- Sequence
- AGAUGG*CGUUCCGAAGGG*CGGCCGAU
- Length
- 26 nucleotides
- Bulged bases
- 8IFE|1|1A|C|2470, 8IFE|1|1A|A|2472, 8IFE|1|1A|G|2475, 8IFE|1|1A|G|2503, 8IFE|1|1A|C|2504, 8IFE|1|1A|C|2505
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IFE|1|1A|A|2451
8IFE|1|1A|G|2452
8IFE|1|1A|A|2453
8IFE|1|1A|U|2454
8IFE|1|1A|G|2455
8IFE|1|1A|G|2456
*
8IFE|1|1A|C|2465
8IFE|1|1A|G|2466
8IFE|1|1A|U|2467
8IFE|1|1A|U|2468
8IFE|1|1A|C|2469
8IFE|1|1A|C|2470
8IFE|1|1A|G|2471
8IFE|1|1A|A|2472
8IFE|1|1A|A|2473
8IFE|1|1A|G|2474
8IFE|1|1A|G|2475
8IFE|1|1A|G|2476
*
8IFE|1|1A|C|2501
8IFE|1|1A|G|2502
8IFE|1|1A|G|2503
8IFE|1|1A|C|2504
8IFE|1|1A|C|2505
8IFE|1|1A|G|2506
8IFE|1|1A|A|2507
8IFE|1|1A|U|2508
Current chains
- Chain 1A
- 28S ribosomal RNA
Nearby chains
- Chain 1C
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain 1D
- 60S ribosomal protein L8
- Chain 2B
- 60S ribosomal protein L7a
- Chain 2H
- 60S ribosomal protein L15
- Chain 2R
- 60S ribosomal protein L23a
- Chain 2d
- 60S ribosomal protein L37
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