Loop J3_8IFE

3D structure

PDB id: 8IFE (explore in PDB, NAKB, or RNA 3D Hub)
Description: Arbekacin-added human 80S ribosome
Experimental method: ELECTRON MICROSCOPY
Resolution: 2.57 Å

Loop

Sequence: UCGGUUG*CCUUCGUCCUGG*CGUCACGCACCGCACGUUCGUG
Length: 41 nucleotides
Bulged bases: 8IFE|1|1A|C|4883, 8IFE|1|1A|A|4938, 8IFE|1|1A|C|4940, 8IFE|1|1A|A|4943, 8IFE|1|1A|C|4944, 8IFE|1|1A|U|4950
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

8IFE|1|1A|U|4748
8IFE|1|1A|C|4749
8IFE|1|1A|G|4750
8IFE|1|1A|G|4751
8IFE|1|1A|U|4752
8IFE|1|1A|U|4753
8IFE|1|1A|G|4754
*
8IFE|1|1A|C|4879
8IFE|1|1A|C|4880
8IFE|1|1A|U|4881
8IFE|1|1A|U|4882
8IFE|1|1A|C|4883
8IFE|1|1A|G|4884
8IFE|1|1A|U|4885
8IFE|1|1A|C|4886
8IFE|1|1A|C|4887
8IFE|1|1A|U|4888
8IFE|1|1A|G|4889
8IFE|1|1A|G|4890
*
8IFE|1|1A|C|4930
8IFE|1|1A|G|4931
8IFE|1|1A|U|4932
8IFE|1|1A|C|4933
8IFE|1|1A|A|4934
8IFE|1|1A|C|4935
8IFE|1|1A|G|4936
8IFE|1|1A|C|4937
8IFE|1|1A|A|4938
8IFE|1|1A|C|4939
8IFE|1|1A|C|4940
8IFE|1|1A|G|4941
8IFE|1|1A|C|4942
8IFE|1|1A|A|4943
8IFE|1|1A|C|4944
8IFE|1|1A|G|4945
8IFE|1|1A|U|4946
8IFE|1|1A|U|4947
8IFE|1|1A|C|4948
8IFE|1|1A|G|4949
8IFE|1|1A|U|4950
8IFE|1|1A|G|4951

Current chains

Chain 1A: 28S ribosomal RNA

Nearby chains

Chain 1H: 60S ribosomal protein L6
Chain 2G: 60S ribosomal protein L14
Chain 2I: 60S ribosomal protein L13a
Chain 2Z: 60S ribosomal protein L35a

J3_8IFE_035