J3_8INF_017

3D structure

PDB id

8INF (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State F'

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8INF|1|2|C|962, 8INF|1|2|G|965, 8INF|1|2|C|967, 8INF|1|2|C|968, 8INF|1|2|C|969, 8INF|1|2|G|970, 8INF|1|2|U|971, 8INF|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INF|1|2|C|712
8INF|1|2|C|713
*
8INF|1|2|G|955
8INF|1|2|A|956
8INF|1|2|G|957
8INF|1|2|G|958
8INF|1|2|G|959
8INF|1|2|A|960
8INF|1|2|G|961
8INF|1|2|C|962
8INF|1|2|G|963
8INF|1|2|A|964
8INF|1|2|G|965
8INF|1|2|A|966
8INF|1|2|C|967
8INF|1|2|C|968
8INF|1|2|C|969
8INF|1|2|G|970
8INF|1|2|U|971
8INF|1|2|C|972
8INF|1|2|G|973
8INF|1|2|C|974
8INF|1|2|C|975
8INF|1|2|G|976
*
8INF|1|2|C|1278
8INF|1|2|A|1279
8INF|1|2|C|1280
8INF|1|2|G|1281
8INF|1|2|G|1282
8INF|1|2|G|1283
8INF|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7