J3_8INK_007

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|A|2551
8INK|1|2|G|2552
8INK|1|2|A|2553
8INK|1|2|U|2554
8INK|1|2|G|2555
*
8INK|1|2|C|2572
8INK|1|2|A|2573
8INK|1|2|G|2574
8INK|1|2|U|2575
*
8INK|1|2|A|2757
8INK|1|2|G|2758
8INK|1|2|G|2759
8INK|1|2|G|2760
8INK|1|2|U|2761
8INK|1|2|G|2762
8INK|1|2|U|2763
8INK|1|2|A|2764
8INK|1|2|A|2765
8INK|1|2|A|2766
8INK|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L27