J3_8INK_013
3D structure
- PDB id
- 8INK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- UUGAAAAGAAC*GAGUUCAAGAGGGCG*CA
- Length
- 28 nucleotides
- Bulged bases
- 8INK|1|2|G|409
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8INK_013 not in the Motif Atlas
- Homologous match to J3_8P9A_047
- Geometric discrepancy: 0.3323
- The information below is about J3_8P9A_047
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_17917.1
- Basepair signature
- cWW-tWH-cSS-cWW-tSH-tHH-cWW-F-F-tWW-tSS-cSS-tWW-tSH-tWH-cSW-F-tHS-cWW-F
- Number of instances in this motif group
- 9
Unit IDs
8INK|1|2|U|380
8INK|1|2|U|381
8INK|1|2|G|382
8INK|1|2|A|383
8INK|1|2|A|384
8INK|1|2|A|385
8INK|1|2|A|386
8INK|1|2|G|387
8INK|1|2|A|388
8INK|1|2|A|389
8INK|1|2|C|390
*
8INK|1|2|G|401
8INK|1|2|A|402
8INK|1|2|G|403
8INK|1|2|U|404
8INK|1|2|U|405
8INK|1|2|C|406
8INK|1|2|A|407
8INK|1|2|A|408
8INK|1|2|G|409
8INK|1|2|A|410
8INK|1|2|G|411
8INK|1|2|G|412
8INK|1|2|G|413
8INK|1|2|C|414
8INK|1|2|G|415
*
8INK|1|8|C|19
8INK|1|8|A|20
Current chains
- Chain 2
- 28S rRNA
- Chain 8
- 5.8S rRNA
Nearby chains
- Chain 4
- GTP-binding protein 4
- Chain D
- 60S ribosomal protein L4
- Chain P
- 60S ribosomal protein L39
- Chain Y
- 60S ribosomal protein L17
- Chain h
- 60S ribosomal protein L26
Coloring options: