J3_8INK_015

3D structure

PDB id

8INK (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8INK|1|2|G|959, 8INK|1|2|G|961, 8INK|1|2|C|962, 8INK|1|2|G|965, 8INK|1|2|C|967, 8INK|1|2|C|968, 8INK|1|2|C|969, 8INK|1|2|G|970, 8INK|1|2|U|971, 8INK|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8INK|1|2|C|712
8INK|1|2|C|713
*
8INK|1|2|G|955
8INK|1|2|A|956
8INK|1|2|G|957
8INK|1|2|G|958
8INK|1|2|G|959
8INK|1|2|A|960
8INK|1|2|G|961
8INK|1|2|C|962
8INK|1|2|G|963
8INK|1|2|A|964
8INK|1|2|G|965
8INK|1|2|A|966
8INK|1|2|C|967
8INK|1|2|C|968
8INK|1|2|C|969
8INK|1|2|G|970
8INK|1|2|U|971
8INK|1|2|C|972
8INK|1|2|G|973
8INK|1|2|C|974
8INK|1|2|C|975
8INK|1|2|G|976
*
8INK|1|2|C|1278
8INK|1|2|A|1279
8INK|1|2|C|1280
8INK|1|2|G|1281
8INK|1|2|G|1282
8INK|1|2|G|1283
8INK|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7