J3_8INK_025
3D structure
- PDB id
- 8INK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State D
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.2 Å
Loop
- Sequence
- GGGGGCG*CUCGCUUCUGGCGCCAA(B8W)*CGAC
- Length
- 29 nucleotides
- Bulged bases
- 8INK|1|2|C|4116, 8INK|1|2|U|4117, 8INK|1|2|U|4118, 8INK|1|2|G|4121
- QA status
- Modified nucleotides: B8W
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8INK|1|2|G|4091
8INK|1|2|G|4092
8INK|1|2|G|4093
8INK|1|2|G|4094
8INK|1|2|G|4095
8INK|1|2|C|4096
8INK|1|2|G|4097
*
8INK|1|2|C|4112
8INK|1|2|U|4113
8INK|1|2|C|4114
8INK|1|2|G|4115
8INK|1|2|C|4116
8INK|1|2|U|4117
8INK|1|2|U|4118
8INK|1|2|C|4119
8INK|1|2|U|4120
8INK|1|2|G|4121
8INK|1|2|G|4122
8INK|1|2|C|4123
8INK|1|2|G|4124
8INK|1|2|C|4125
8INK|1|2|C|4126
8INK|1|2|A|4127
8INK|1|2|A|4128
8INK|1|2|B8W|4129
*
8INK|1|2|C|4155
8INK|1|2|G|4156
8INK|1|2|A|4157
8INK|1|2|C|4158
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain E
- 60S ribosomal protein L30
- Chain F
- 60S ribosomal protein L34
- Chain G
- 60S ribosomal protein L7a
- Chain X
- 60S ribosomal protein L37a
- Chain g
- 60S ribosomal protein L23a
- Chain i
- 60S ribosomal protein L27
- Chain m
- 60S ribosomal protein L8
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