J3_8IPD_016

3D structure

PDB id

8IPD (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State C

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IPD|1|2|G|959, 8IPD|1|2|C|962, 8IPD|1|2|G|965, 8IPD|1|2|C|967, 8IPD|1|2|C|968, 8IPD|1|2|C|969, 8IPD|1|2|U|971, 8IPD|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPD|1|2|C|712
8IPD|1|2|C|713
*
8IPD|1|2|G|955
8IPD|1|2|A|956
8IPD|1|2|G|957
8IPD|1|2|G|958
8IPD|1|2|G|959
8IPD|1|2|A|960
8IPD|1|2|G|961
8IPD|1|2|C|962
8IPD|1|2|G|963
8IPD|1|2|A|964
8IPD|1|2|G|965
8IPD|1|2|A|966
8IPD|1|2|C|967
8IPD|1|2|C|968
8IPD|1|2|C|969
8IPD|1|2|G|970
8IPD|1|2|U|971
8IPD|1|2|C|972
8IPD|1|2|G|973
8IPD|1|2|C|974
8IPD|1|2|C|975
8IPD|1|2|G|976
*
8IPD|1|2|C|1278
8IPD|1|2|A|1279
8IPD|1|2|C|1280
8IPD|1|2|G|1281
8IPD|1|2|G|1282
8IPD|1|2|G|1283
8IPD|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7