J3_8IPY_007

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

AGAUGG*CCAGU*AGGGUGUAAAU

Length

22 nucleotides

Bulged bases

8IPY|1|2|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|A|2551
8IPY|1|2|G|2552
8IPY|1|2|A|2553
8IPY|1|2|U|2554
8IPY|1|2|G|2555
8IPY|1|2|G|2556
*
8IPY|1|2|C|2571
8IPY|1|2|C|2572
8IPY|1|2|A|2573
8IPY|1|2|G|2574
8IPY|1|2|U|2575
*
8IPY|1|2|A|2757
8IPY|1|2|G|2758
8IPY|1|2|G|2759
8IPY|1|2|G|2760
8IPY|1|2|U|2761
8IPY|1|2|G|2762
8IPY|1|2|U|2763
8IPY|1|2|A|2764
8IPY|1|2|A|2765
8IPY|1|2|A|2766
8IPY|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain f

Ribosome biogenesis protein NOP53

Chain i

60S ribosomal protein L27

Chain q

Pescadillo homolog