J3_8IPY_014

3D structure

PDB id

8IPY (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State D'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.2 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IPY|1|2|G|959, 8IPY|1|2|G|961, 8IPY|1|2|C|962, 8IPY|1|2|G|965, 8IPY|1|2|C|967, 8IPY|1|2|C|968, 8IPY|1|2|C|969, 8IPY|1|2|G|970, 8IPY|1|2|U|971, 8IPY|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IPY|1|2|C|712
8IPY|1|2|C|713
*
8IPY|1|2|G|955
8IPY|1|2|A|956
8IPY|1|2|G|957
8IPY|1|2|G|958
8IPY|1|2|G|959
8IPY|1|2|A|960
8IPY|1|2|G|961
8IPY|1|2|C|962
8IPY|1|2|G|963
8IPY|1|2|A|964
8IPY|1|2|G|965
8IPY|1|2|A|966
8IPY|1|2|C|967
8IPY|1|2|C|968
8IPY|1|2|C|969
8IPY|1|2|G|970
8IPY|1|2|U|971
8IPY|1|2|C|972
8IPY|1|2|G|973
8IPY|1|2|C|974
8IPY|1|2|C|975
8IPY|1|2|G|976
*
8IPY|1|2|C|1278
8IPY|1|2|A|1279
8IPY|1|2|C|1280
8IPY|1|2|G|1281
8IPY|1|2|G|1282
8IPY|1|2|G|1283
8IPY|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7