J3_8IR1_008

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

8IR1|1|2|A|4280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|4241
8IR1|1|2|U|4242
8IR1|1|2|C|4243
8IR1|1|2|A|4244
8IR1|1|2|G|4245
*
8IR1|1|2|C|4263
8IR1|1|2|G|4264
8IR1|1|2|U|4265
8IR1|1|2|G|4266
8IR1|1|2|G|4267
8IR1|1|2|A|4268
8IR1|1|2|G|4269
*
8IR1|1|2|C|4278
8IR1|1|2|A|4279
8IR1|1|2|A|4280
8IR1|1|2|A|4281
8IR1|1|2|A|4282
8IR1|1|2|G|4283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain A

60S ribosomal protein L11

Chain C

60S ribosomal protein L5

Chain T

Ribosome production factor 2 homolog

Chain W

5S ribosomal RNA; 5S rRNA