J3_8IR1_014

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8IR1|1|2|C|704, 8IR1|1|2|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|451
8IR1|1|2|A|452
8IR1|1|2|G|453
8IR1|1|2|U|454
8IR1|1|2|C|455
*
8IR1|1|2|G|701
8IR1|1|2|U|702
8IR1|1|2|G|703
8IR1|1|2|C|704
8IR1|1|2|G|705
*
8IR1|1|2|C|1292
8IR1|1|2|G|1293
8IR1|1|2|A|1294
8IR1|1|2|C|1295
8IR1|1|2|G|1296

Current chains

Chain 2

28S rRNA

Nearby chains

Chain k

60S ribosomal protein L32

Chain l

60S ribosomal protein L28

Chain n

60S ribosomal protein L35a

Chain o

60S ribosomal protein L6