J3_8IR1_015

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IR1|1|2|G|959, 8IR1|1|2|G|961, 8IR1|1|2|C|962, 8IR1|1|2|C|967, 8IR1|1|2|C|968, 8IR1|1|2|C|969, 8IR1|1|2|G|970, 8IR1|1|2|U|971, 8IR1|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|C|712
8IR1|1|2|C|713
*
8IR1|1|2|G|955
8IR1|1|2|A|956
8IR1|1|2|G|957
8IR1|1|2|G|958
8IR1|1|2|G|959
8IR1|1|2|A|960
8IR1|1|2|G|961
8IR1|1|2|C|962
8IR1|1|2|G|963
8IR1|1|2|A|964
8IR1|1|2|G|965
8IR1|1|2|A|966
8IR1|1|2|C|967
8IR1|1|2|C|968
8IR1|1|2|C|969
8IR1|1|2|G|970
8IR1|1|2|U|971
8IR1|1|2|C|972
8IR1|1|2|G|973
8IR1|1|2|C|974
8IR1|1|2|C|975
8IR1|1|2|G|976
*
8IR1|1|2|C|1278
8IR1|1|2|A|1279
8IR1|1|2|C|1280
8IR1|1|2|G|1281
8IR1|1|2|G|1282
8IR1|1|2|G|1283
8IR1|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7