J3_8IR1_022

3D structure

PDB id

8IR1 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State A

Experimental method

ELECTRON MICROSCOPY

Resolution

3.3 Å

Loop

Sequence

AGAUG*CAGU*AGGGUGUAAAU

Length

20 nucleotides

Bulged bases

8IR1|1|2|U|2763

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR1|1|2|A|2551
8IR1|1|2|G|2552
8IR1|1|2|A|2553
8IR1|1|2|U|2554
8IR1|1|2|G|2555
*
8IR1|1|2|C|2572
8IR1|1|2|A|2573
8IR1|1|2|G|2574
8IR1|1|2|U|2575
*
8IR1|1|2|A|2757
8IR1|1|2|G|2758
8IR1|1|2|G|2759
8IR1|1|2|G|2760
8IR1|1|2|U|2761
8IR1|1|2|G|2762
8IR1|1|2|U|2763
8IR1|1|2|A|2764
8IR1|1|2|A|2765
8IR1|1|2|A|2766
8IR1|1|2|U|2767

Current chains

Chain 2

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L27