J3_8IR3_009

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CUCAG*CGUGGAG*CAAAAG

Length

18 nucleotides

Bulged bases

8IR3|1|2|A|4280, 8IR3|1|2|A|4282

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|4241
8IR3|1|2|U|4242
8IR3|1|2|C|4243
8IR3|1|2|A|4244
8IR3|1|2|G|4245
*
8IR3|1|2|C|4263
8IR3|1|2|G|4264
8IR3|1|2|U|4265
8IR3|1|2|G|4266
8IR3|1|2|G|4267
8IR3|1|2|A|4268
8IR3|1|2|G|4269
*
8IR3|1|2|C|4278
8IR3|1|2|A|4279
8IR3|1|2|A|4280
8IR3|1|2|A|4281
8IR3|1|2|A|4282
8IR3|1|2|G|4283

Current chains

Chain 2

28S rRNA

Nearby chains

Chain 5

5S ribosomal RNA; 5S rRNA

Chain A

60S ribosomal protein L11

Chain C

60S ribosomal protein L5

Chain T

Ribosome production factor 2 homolog