J3_8IR3_011

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CAU*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8IR3|1|2|A|5061

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|4970
8IR3|1|2|A|4971
8IR3|1|2|U|4972
*
8IR3|1|2|G|4986
8IR3|1|2|C|4987
8IR3|1|2|U|4988
8IR3|1|2|U|4989
8IR3|1|2|C|4990
8IR3|1|2|U|4991
*
8IR3|1|2|A|5060
8IR3|1|2|A|5061
8IR3|1|2|G|5062
8IR3|1|2|G|5063

Current chains

Chain 2

28S rRNA

Nearby chains

Chain B

60S ribosomal protein L3

Chain Y

60S ribosomal protein L17

Chain j

60S ribosomal protein L31