J3_8IR3_017

3D structure

PDB id

8IR3 (explore in PDB, NAKB, or RNA 3D Hub)

Description

human nuclear pre-60S ribosomal particle - State B'

Experimental method

ELECTRON MICROSCOPY

Resolution

3.5 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8IR3|1|2|G|959, 8IR3|1|2|C|967, 8IR3|1|2|C|968, 8IR3|1|2|C|969, 8IR3|1|2|G|970, 8IR3|1|2|U|971, 8IR3|1|2|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8IR3|1|2|C|712
8IR3|1|2|C|713
*
8IR3|1|2|G|955
8IR3|1|2|A|956
8IR3|1|2|G|957
8IR3|1|2|G|958
8IR3|1|2|G|959
8IR3|1|2|A|960
8IR3|1|2|G|961
8IR3|1|2|C|962
8IR3|1|2|G|963
8IR3|1|2|A|964
8IR3|1|2|G|965
8IR3|1|2|A|966
8IR3|1|2|C|967
8IR3|1|2|C|968
8IR3|1|2|C|969
8IR3|1|2|G|970
8IR3|1|2|U|971
8IR3|1|2|C|972
8IR3|1|2|G|973
8IR3|1|2|C|974
8IR3|1|2|C|975
8IR3|1|2|G|976
*
8IR3|1|2|C|1278
8IR3|1|2|A|1279
8IR3|1|2|C|1280
8IR3|1|2|G|1281
8IR3|1|2|G|1282
8IR3|1|2|G|1283
8IR3|1|2|G|1284

Current chains

Chain 2

28S rRNA

Nearby chains

Chain D

60S ribosomal protein L4

Chain k

60S ribosomal protein L32

Chain o

60S ribosomal protein L6

Chain p

60S ribosomal protein L7