J3_8IR3_020
3D structure
- PDB id
- 8IR3 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- human nuclear pre-60S ribosomal particle - State B'
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3.5 Å
Loop
- Sequence
- GAGAUGG*CGUUCCGAAGGG*CGGCCGAUC
- Length
- 28 nucleotides
- Bulged bases
- 8IR3|1|2|C|2470, 8IR3|1|2|A|2472, 8IR3|1|2|G|2475, 8IR3|1|2|C|2504
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8IR3|1|2|G|2450
8IR3|1|2|A|2451
8IR3|1|2|G|2452
8IR3|1|2|A|2453
8IR3|1|2|U|2454
8IR3|1|2|G|2455
8IR3|1|2|G|2456
*
8IR3|1|2|C|2465
8IR3|1|2|G|2466
8IR3|1|2|U|2467
8IR3|1|2|U|2468
8IR3|1|2|C|2469
8IR3|1|2|C|2470
8IR3|1|2|G|2471
8IR3|1|2|A|2472
8IR3|1|2|A|2473
8IR3|1|2|G|2474
8IR3|1|2|G|2475
8IR3|1|2|G|2476
*
8IR3|1|2|C|2501
8IR3|1|2|G|2502
8IR3|1|2|G|2503
8IR3|1|2|C|2504
8IR3|1|2|C|2505
8IR3|1|2|G|2506
8IR3|1|2|A|2507
8IR3|1|2|U|2508
8IR3|1|2|C|2509
Current chains
- Chain 2
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain G
- 60S ribosomal protein L7a
- Chain M
- 60S ribosomal protein L37
- Chain U
- 60S ribosomal protein L15
- Chain f
- Ribosome biogenesis protein NOP53
- Chain g
- 60S ribosomal protein L23a
- Chain m
- 60S ribosomal protein L8
- Chain q
- Pescadillo homolog
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