J3_8J1Z_001

3D structure

PDB id

8J1Z (explore in PDB, NAKB, or RNA 3D Hub)

Description

The global structure of pre50S related to DbpA in state3

Experimental method

ELECTRON MICROSCOPY

Resolution

2.6 Å

Loop

Sequence

UGAUCUA*UGG*CAAA

Length

14 nucleotides

Bulged bases

8J1Z|1|a|U|686, 8J1Z|1|a|A|792

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8J1Z_001 not in the Motif Atlas

Homologous match to J3_5J7L_038

Geometric discrepancy: 0.068

The information below is about J3_5J7L_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_64189.2

Basepair signature

cWW-tWH-cWW-tSW-F-F-cWW

Number of instances in this motif group

7

Unit IDs

8J1Z|1|a|U|683
8J1Z|1|a|G|684
8J1Z|1|a|A|685
8J1Z|1|a|U|686
8J1Z|1|a|C|687
8J1Z|1|a|U|688
8J1Z|1|a|A|689
*
8J1Z|1|a|U|773
8J1Z|1|a|G|774
8J1Z|1|a|G|775
*
8J1Z|1|a|C|791
8J1Z|1|a|A|792
8J1Z|1|a|A|793
8J1Z|1|a|A|794

Current chains

Chain a

23S rRNA

Nearby chains

Chain 1

50S ribosomal protein L34

Chain c

50S ribosomal protein L2