J3_8J7R_001

3D structure

PDB id

8J7R (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the J-K-St region of EMCV IRES in complex with eIF4G-HEAT1 and eIF4A (J-K-St/eIF4G focused)

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

GAUGC*GGC*GUUAAAAAACGU

Length

20 nucleotides

Bulged bases

8J7R|1|C|G|777

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8J7R|1|C|G|690
8J7R|1|C|A|691
8J7R|1|C|U|692
8J7R|1|C|G|693
8J7R|1|C|C|694
*
8J7R|1|C|G|730
8J7R|1|C|G|731
8J7R|1|C|C|732
*
8J7R|1|C|G|767
8J7R|1|C|U|768
8J7R|1|C|U|769
8J7R|1|C|A|770
8J7R|1|C|A|771
8J7R|1|C|A|772
8J7R|1|C|A|773
8J7R|1|C|A|774
8J7R|1|C|A|775
8J7R|1|C|C|776
8J7R|1|C|G|777
8J7R|1|C|U|778

Current chains

Chain C

IRES RNA (J-K-St)

Nearby chains

Chain B

Eukaryotic translation initiation factor 4 gamma 1