J3_8JDJ_022

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8JDJ|1|D|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|196
8JDJ|1|D|A|197
8JDJ|1|D|A|198
8JDJ|1|D|G|199
*
8JDJ|1|D|C|215
8JDJ|1|D|C|216
8JDJ|1|D|C|217
8JDJ|1|D|A|218
8JDJ|1|D|G|219
8JDJ|1|D|C|220
8JDJ|1|D|C|221
8JDJ|1|D|C|222
8JDJ|1|D|G|223
8JDJ|1|D|U|224
8JDJ|1|D|G|225
8JDJ|1|D|G|226
8JDJ|1|D|A|227
8JDJ|1|D|C|228
*
8JDJ|1|D|G|240
8JDJ|1|D|G|241
8JDJ|1|D|U|242
8JDJ|1|D|A|243
8JDJ|1|D|G|244

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26