J3_8JDJ_027

3D structure

PDB id

8JDJ (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.5 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8JDJ|1|D|G|959, 8JDJ|1|D|C|962, 8JDJ|1|D|G|965, 8JDJ|1|D|C|967, 8JDJ|1|D|C|968, 8JDJ|1|D|C|969, 8JDJ|1|D|U|971, 8JDJ|1|D|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDJ|1|D|C|712
8JDJ|1|D|C|713
*
8JDJ|1|D|G|955
8JDJ|1|D|A|956
8JDJ|1|D|G|957
8JDJ|1|D|G|958
8JDJ|1|D|G|959
8JDJ|1|D|A|960
8JDJ|1|D|G|961
8JDJ|1|D|C|962
8JDJ|1|D|G|963
8JDJ|1|D|A|964
8JDJ|1|D|G|965
8JDJ|1|D|A|966
8JDJ|1|D|C|967
8JDJ|1|D|C|968
8JDJ|1|D|C|969
8JDJ|1|D|G|970
8JDJ|1|D|U|971
8JDJ|1|D|C|972
8JDJ|1|D|G|973
8JDJ|1|D|C|974
8JDJ|1|D|C|975
8JDJ|1|D|G|976
*
8JDJ|1|D|C|1278
8JDJ|1|D|A|1279
8JDJ|1|D|C|1280
8JDJ|1|D|G|1281
8JDJ|1|D|G|1282
8JDJ|1|D|G|1283
8JDJ|1|D|G|1284

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain j

60S ribosomal protein L32