J3_8JDJ_043
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- UUGAAAAAA(PSU)(PSU)AGAG*CAG*CUGGAUACCGCAGCUA
- Length
- 34 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDJ|1|w|U|805
8JDJ|1|w|U|806
8JDJ|1|w|G|807
8JDJ|1|w|A|808
8JDJ|1|w|A|809
8JDJ|1|w|A|810
8JDJ|1|w|A|811
8JDJ|1|w|A|812
8JDJ|1|w|A|813
8JDJ|1|w|PSU|814
8JDJ|1|w|PSU|815
8JDJ|1|w|A|816
8JDJ|1|w|G|817
8JDJ|1|w|A|818
8JDJ|1|w|G|819
*
8JDJ|1|w|C|829
8JDJ|1|w|A|830
8JDJ|1|w|G|831
*
8JDJ|1|w|C|843
8JDJ|1|w|U|844
8JDJ|1|w|G|845
8JDJ|1|w|G|846
8JDJ|1|w|A|847
8JDJ|1|w|U|848
8JDJ|1|w|A|849
8JDJ|1|w|C|850
8JDJ|1|w|C|851
8JDJ|1|w|G|852
8JDJ|1|w|C|853
8JDJ|1|w|A|854
8JDJ|1|w|G|855
8JDJ|1|w|C|856
8JDJ|1|w|U|857
8JDJ|1|w|A|858
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 1
- 40S ribosomal protein S4, X isoform
- Chain 6
- 40S ribosomal protein S9
- Chain 8
- 40S ribosomal protein S11
- Chain AI
- 40S ribosomal protein S15a
- Chain AK
- 40S ribosomal protein S24
Coloring options: