J3_8JDJ_045
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)*GGGAAACCUCAC*GGCUG
- Length
- 25 nucleotides
- Bulged bases
- 8JDJ|1|w|G|1256, 8JDJ|1|w|A|1258, 8JDJ|1|w|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDJ_045 not in the Motif Atlas
- Homologous match to J3_8C3A_040
- Geometric discrepancy: 0.1464
- The information below is about J3_8C3A_040
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_83516.3
- Basepair signature
- cWW-F-F-F-tWW-F-tSH-tSS-cSS-F-F-F-F-F-cWW-cWW-F-F-F
- Number of instances in this motif group
- 4
Unit IDs
8JDJ|1|w|C|1237
8JDJ|1|w|PSU|1238
8JDJ|1|w|U|1239
8JDJ|1|w|A|1240
8JDJ|1|w|A|1241
8JDJ|1|w|U|1242
8JDJ|1|w|U|1243
8JDJ|1|w|PSU|1244
*
8JDJ|1|w|G|1255
8JDJ|1|w|G|1256
8JDJ|1|w|G|1257
8JDJ|1|w|A|1258
8JDJ|1|w|A|1259
8JDJ|1|w|A|1260
8JDJ|1|w|C|1261
8JDJ|1|w|C|1262
8JDJ|1|w|U|1263
8JDJ|1|w|C|1264
8JDJ|1|w|A|1265
8JDJ|1|w|C|1266
*
8JDJ|1|w|G|1516
8JDJ|1|w|G|1517
8JDJ|1|w|C|1518
8JDJ|1|w|U|1519
8JDJ|1|w|G|1520
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S15
- Chain AE
- 40S ribosomal protein S18
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain C
- Transfer RNA; tRNA
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