J3_8JDJ_048
3D structure
- PDB id
- 8JDJ (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(Q34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.5 Å
Loop
- Sequence
- CACUG*CGUGAUGGGGAUCG*CAUGAACGAG
- Length
- 29 nucleotides
- Bulged bases
- 8JDJ|1|w|U|1535, 8JDJ|1|w|G|1603, 8JDJ|1|w|A|1607, 8JDJ|1|w|G|1636
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDJ|1|w|C|1532
8JDJ|1|w|A|1533
8JDJ|1|w|C|1534
8JDJ|1|w|U|1535
8JDJ|1|w|G|1536
*
8JDJ|1|w|C|1597
8JDJ|1|w|G|1598
8JDJ|1|w|U|1599
8JDJ|1|w|G|1600
8JDJ|1|w|A|1601
8JDJ|1|w|U|1602
8JDJ|1|w|G|1603
8JDJ|1|w|G|1604
8JDJ|1|w|G|1605
8JDJ|1|w|G|1606
8JDJ|1|w|A|1607
8JDJ|1|w|U|1608
8JDJ|1|w|C|1609
8JDJ|1|w|G|1610
*
8JDJ|1|w|C|1629
8JDJ|1|w|A|1630
8JDJ|1|w|U|1631
8JDJ|1|w|G|1632
8JDJ|1|w|A|1633
8JDJ|1|w|A|1634
8JDJ|1|w|C|1635
8JDJ|1|w|G|1636
8JDJ|1|w|A|1637
8JDJ|1|w|G|1638
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 2
- 40S ribosomal protein S5
- Chain AE
- 40S ribosomal protein S18
- Chain AF
- 40S ribosomal protein S19
- Chain AL
- 40S ribosomal protein S25
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