J3_8JDK_012

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CCAUAC*GGC*GUG

Length

12 nucleotides

Bulged bases

8JDK|1|E|U|12

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|E|C|9
8JDK|1|E|C|10
8JDK|1|E|A|11
8JDK|1|E|U|12
8JDK|1|E|A|13
8JDK|1|E|C|14
*
8JDK|1|E|G|65
8JDK|1|E|G|66
8JDK|1|E|C|67
*
8JDK|1|E|G|108
8JDK|1|E|U|109
8JDK|1|E|G|110

Current chains

Chain E

5S ribosomal RNA

Nearby chains

Chain D

Large subunit ribosomal RNA; LSU rRNA

Chain J

60S ribosomal protein L5

Chain O

60S ribosomal protein L10-like

Chain Y

60S ribosomal protein L21