J3_8JDK_015

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8JDK|1|w|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|w|C|1094
8JDK|1|w|U|1095
8JDK|1|w|G|1096
*
8JDK|1|w|U|1136
8JDK|1|w|U|1137
8JDK|1|w|C|1138
8JDK|1|w|C|1139
8JDK|1|w|G|1140
*
8JDK|1|w|C|1147
8JDK|1|w|A|1148
8JDK|1|w|A|1149
8JDK|1|w|A|1150
8JDK|1|w|G|1151

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S21

Chain AI

40S ribosomal protein S15a

Chain AM

40S ribosomal protein S26

Chain AN

40S ribosomal protein S27

Chain x

40S ribosomal protein SA