J3_8JDK_022

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8JDK|1|D|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|196
8JDK|1|D|A|197
8JDK|1|D|A|198
8JDK|1|D|G|199
*
8JDK|1|D|C|215
8JDK|1|D|C|216
8JDK|1|D|C|217
8JDK|1|D|A|218
8JDK|1|D|G|219
8JDK|1|D|C|220
8JDK|1|D|C|221
8JDK|1|D|C|222
8JDK|1|D|G|223
8JDK|1|D|U|224
8JDK|1|D|G|225
8JDK|1|D|G|226
8JDK|1|D|A|227
8JDK|1|D|C|228
*
8JDK|1|D|G|240
8JDK|1|D|G|241
8JDK|1|D|U|242
8JDK|1|D|A|243
8JDK|1|D|G|244

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26