J3_8JDK_023
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- CGAUAGUCAACAAGUAC*GGAAAG*CUCG
- Length
- 27 nucleotides
- Bulged bases
- 8JDK|1|D|U|354, 8JDK|1|D|A|362, 8JDK|1|F|C|23
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDK_023 not in the Motif Atlas
- Homologous match to J3_8P9A_045
- Geometric discrepancy: 0.0576
- The information below is about J3_8P9A_045
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_07616.1
- Basepair signature
- cWW-cSS-tSS-tSW-tHW-cWW-tWH-F-F-tHH-tSS-tWH-F-tHS-cWW-F-cSH
- Number of instances in this motif group
- 10
Unit IDs
8JDK|1|D|C|351
8JDK|1|D|G|352
8JDK|1|D|A|353
8JDK|1|D|U|354
8JDK|1|D|A|355
8JDK|1|D|G|356
8JDK|1|D|U|357
8JDK|1|D|C|358
8JDK|1|D|A|359
8JDK|1|D|A|360
8JDK|1|D|C|361
8JDK|1|D|A|362
8JDK|1|D|A|363
8JDK|1|D|G|364
8JDK|1|D|U|365
8JDK|1|D|A|366
8JDK|1|D|C|367
*
8JDK|1|D|G|374
8JDK|1|D|G|375
8JDK|1|D|A|376
8JDK|1|D|A|377
8JDK|1|D|A|378
8JDK|1|D|G|379
*
8JDK|1|F|C|21
8JDK|1|F|U|22
8JDK|1|F|C|23
8JDK|1|F|G|24
Current chains
- Chain D
- 28S ribosomal RNA
- Chain F
- 5.8S ribosomal RNA
Nearby chains
- Chain I
- 60S ribosomal protein L4
- Chain d
- 60S ribosomal protein L26
- Chain o
- 60S ribosomal protein L37
- Chain q
- 60S ribosomal protein L39
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