J3_8JDK_026

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8JDK|1|D|C|704, 8JDK|1|D|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|451
8JDK|1|D|A|452
8JDK|1|D|G|453
8JDK|1|D|U|454
8JDK|1|D|C|455
*
8JDK|1|D|G|701
8JDK|1|D|U|702
8JDK|1|D|G|703
8JDK|1|D|C|704
8JDK|1|D|G|705
*
8JDK|1|D|C|1292
8JDK|1|D|G|1293
8JDK|1|D|A|1294
8JDK|1|D|C|1295
8JDK|1|D|G|1296

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain j

60S ribosomal protein L32

Chain k

60S ribosomal protein L35a