J3_8JDK_027

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8JDK|1|D|G|959, 8JDK|1|D|C|962, 8JDK|1|D|G|965, 8JDK|1|D|C|967, 8JDK|1|D|C|968, 8JDK|1|D|C|969, 8JDK|1|D|U|971, 8JDK|1|D|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|712
8JDK|1|D|C|713
*
8JDK|1|D|G|955
8JDK|1|D|A|956
8JDK|1|D|G|957
8JDK|1|D|G|958
8JDK|1|D|G|959
8JDK|1|D|A|960
8JDK|1|D|G|961
8JDK|1|D|C|962
8JDK|1|D|G|963
8JDK|1|D|A|964
8JDK|1|D|G|965
8JDK|1|D|A|966
8JDK|1|D|C|967
8JDK|1|D|C|968
8JDK|1|D|C|969
8JDK|1|D|G|970
8JDK|1|D|U|971
8JDK|1|D|C|972
8JDK|1|D|G|973
8JDK|1|D|C|974
8JDK|1|D|C|975
8JDK|1|D|G|976
*
8JDK|1|D|C|1278
8JDK|1|D|A|1279
8JDK|1|D|C|1280
8JDK|1|D|G|1281
8JDK|1|D|G|1282
8JDK|1|D|G|1283
8JDK|1|D|G|1284

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain j

60S ribosomal protein L32