J3_8JDK_035

3D structure

PDB id

8JDK (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.26 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8JDK|1|D|U|4989, 8JDK|1|D|C|4990

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDK|1|D|C|4970
8JDK|1|D|A|4971
8JDK|1|D|PSU|4972
*
8JDK|1|D|G|4986
8JDK|1|D|C|4987
8JDK|1|D|U|4988
8JDK|1|D|U|4989
8JDK|1|D|C|4990
8JDK|1|D|U|4991
*
8JDK|1|D|A|5060
8JDK|1|D|A|5061
8JDK|1|D|G|5062
8JDK|1|D|G|5063

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17

Chain i

60S ribosomal protein L31