J3_8JDK_040
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- U(OMG)GA*UUAAGA*UA
- Length
- 12 nucleotides
- Bulged bases
- 8JDK|1|w|G|921
- QA status
- Modified nucleotides: OMG
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|w|U|682
8JDK|1|w|OMG|683
8JDK|1|w|G|684
8JDK|1|w|A|685
*
8JDK|1|w|U|917
8JDK|1|w|U|918
8JDK|1|w|A|919
8JDK|1|w|A|920
8JDK|1|w|G|921
8JDK|1|w|A|922
*
8JDK|1|w|U|1022
8JDK|1|w|A|1023
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S7
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain AN
- 40S ribosomal protein S27
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