J3_8JDK_046
3D structure
- PDB id
- 8JDK (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Asp(ManQ34) and mRNA(GAU)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.26 Å
Loop
- Sequence
- (OMC)UGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 8JDK|1|w|U|1477
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDK|1|w|OMC|1391
8JDK|1|w|U|1392
8JDK|1|w|G|1393
8JDK|1|w|G|1394
8JDK|1|w|C|1395
*
8JDK|1|w|G|1450
8JDK|1|w|G|1451
8JDK|1|w|A|1452
8JDK|1|w|C|1453
8JDK|1|w|A|1454
8JDK|1|w|A|1455
8JDK|1|w|G|1456
*
8JDK|1|w|C|1470
8JDK|1|w|C|1471
8JDK|1|w|C|1472
8JDK|1|w|G|1473
8JDK|1|w|A|1474
8JDK|1|w|G|1475
8JDK|1|w|A|1476
8JDK|1|w|U|1477
8JDK|1|w|U|1478
8JDK|1|w|G|1479
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 2
- 40S ribosomal protein S5
- Chain AC
- 40S ribosomal protein S16
- Chain AD
- 40S ribosomal protein S17
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain AR
- Receptor of activated protein C kinase 1
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