J3_8JDL_012
3D structure
- PDB id
- 8JDL (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.42 Å
Loop
- Sequence
- A(PSU)CU(OMU)U*A(PSU)GGAAUAGG*CAUGAU
- Length
- 22 nucleotides
- Bulged bases
- 8JDL|1|w|C|687, 8JDL|1|w|U|688, 8JDL|1|w|U|871, 8JDL|1|w|G|873, 8JDL|1|w|A|913
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDL|1|w|A|685
8JDL|1|w|PSU|686
8JDL|1|w|C|687
8JDL|1|w|U|688
8JDL|1|w|OMU|799
8JDL|1|w|U|800
*
8JDL|1|w|A|865
8JDL|1|w|PSU|866
8JDL|1|w|G|867
8JDL|1|w|G|868
8JDL|1|w|A|869
8JDL|1|w|A|870
8JDL|1|w|U|871
8JDL|1|w|A|872
8JDL|1|w|G|873
8JDL|1|w|G|874
*
8JDL|1|w|C|912
8JDL|1|w|A|913
8JDL|1|w|U|914
8JDL|1|w|G|915
8JDL|1|w|A|916
8JDL|1|w|U|917
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 4
- 40S ribosomal protein S7
- Chain 8
- 40S ribosomal protein S11
- Chain 9
- 40S ribosomal protein S13
- Chain AI
- 40S ribosomal protein S15a
- Chain AJ
- 40S ribosomal protein S23
- Chain W
- 60S ribosomal protein L19
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