J3_8JDL_022

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8JDL|1|D|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|196
8JDL|1|D|A|197
8JDL|1|D|A|198
8JDL|1|D|G|199
*
8JDL|1|D|C|215
8JDL|1|D|C|216
8JDL|1|D|C|217
8JDL|1|D|A|218
8JDL|1|D|G|219
8JDL|1|D|C|220
8JDL|1|D|C|221
8JDL|1|D|C|222
8JDL|1|D|G|223
8JDL|1|D|U|224
8JDL|1|D|G|225
8JDL|1|D|G|226
8JDL|1|D|A|227
8JDL|1|D|C|228
*
8JDL|1|D|G|240
8JDL|1|D|G|241
8JDL|1|D|U|242
8JDL|1|D|A|243
8JDL|1|D|G|244

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26