J3_8JDL_026

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CAGUC*GUGCG*CGACG

Length

15 nucleotides

Bulged bases

8JDL|1|D|C|704, 8JDL|1|D|C|1295

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|451
8JDL|1|D|A|452
8JDL|1|D|G|453
8JDL|1|D|U|454
8JDL|1|D|C|455
*
8JDL|1|D|G|701
8JDL|1|D|U|702
8JDL|1|D|G|703
8JDL|1|D|C|704
8JDL|1|D|G|705
*
8JDL|1|D|C|1292
8JDL|1|D|G|1293
8JDL|1|D|A|1294
8JDL|1|D|C|1295
8JDL|1|D|G|1296

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain K

60S ribosomal protein L6

Chain j

60S ribosomal protein L32

Chain k

60S ribosomal protein L35a