J3_8JDL_027

3D structure

PDB id

8JDL (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (non-rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.42 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8JDL|1|D|G|959, 8JDL|1|D|C|962, 8JDL|1|D|G|965, 8JDL|1|D|C|967, 8JDL|1|D|C|968, 8JDL|1|D|C|969, 8JDL|1|D|U|971, 8JDL|1|D|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDL|1|D|C|712
8JDL|1|D|C|713
*
8JDL|1|D|G|955
8JDL|1|D|A|956
8JDL|1|D|G|957
8JDL|1|D|G|958
8JDL|1|D|G|959
8JDL|1|D|A|960
8JDL|1|D|G|961
8JDL|1|D|C|962
8JDL|1|D|G|963
8JDL|1|D|A|964
8JDL|1|D|G|965
8JDL|1|D|A|966
8JDL|1|D|C|967
8JDL|1|D|C|968
8JDL|1|D|C|969
8JDL|1|D|G|970
8JDL|1|D|U|971
8JDL|1|D|C|972
8JDL|1|D|G|973
8JDL|1|D|C|974
8JDL|1|D|C|975
8JDL|1|D|G|976
*
8JDL|1|D|C|1278
8JDL|1|D|A|1279
8JDL|1|D|C|1280
8JDL|1|D|G|1281
8JDL|1|D|G|1282
8JDL|1|D|G|1283
8JDL|1|D|G|1284

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain j

60S ribosomal protein L32