J3_8JDM_008
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- GGGG*CGCUUCUGGCGCCAAG*CGAC
- Length
- 24 nucleotides
- Bulged bases
- 8JDM|1|D|G|4115, 8JDM|1|D|C|4116, 8JDM|1|D|U|4117, 8JDM|1|D|U|4118, 8JDM|1|D|C|4119, 8JDM|1|D|U|4120, 8JDM|1|D|G|4121
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- J3_8JDM_008 not in the Motif Atlas
- Homologous match to J3_8C3A_009
- Geometric discrepancy: 0.5285
- The information below is about J3_8C3A_009
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- J3_02167.1
- Basepair signature
- cWW-F-F-F-F-F-cWW-F-tHH-tHS-cWW
- Number of instances in this motif group
- 1
Unit IDs
8JDM|1|D|G|4091
8JDM|1|D|G|4092
8JDM|1|D|G|4093
8JDM|1|D|G|4094
*
8JDM|1|D|C|4114
8JDM|1|D|G|4115
8JDM|1|D|C|4116
8JDM|1|D|U|4117
8JDM|1|D|U|4118
8JDM|1|D|C|4119
8JDM|1|D|U|4120
8JDM|1|D|G|4121
8JDM|1|D|G|4122
8JDM|1|D|C|4123
8JDM|1|D|G|4124
8JDM|1|D|C|4125
8JDM|1|D|C|4126
8JDM|1|D|A|4127
8JDM|1|D|A|4128
8JDM|1|D|G|4129
*
8JDM|1|D|C|4155
8JDM|1|D|G|4156
8JDM|1|D|A|4157
8JDM|1|D|C|4158
Current chains
- Chain D
- 28S ribosomal RNA
Nearby chains
- Chain G
- 60S ribosomal protein L8
- Chain M
- 60S ribosomal protein L7a
- Chain c
- 60S ribosomal protein L23a
- Chain e
- 60S ribosomal protein L27
- Chain h
- 60S ribosomal protein L30
- Chain l
- 60S ribosomal protein L34
- Chain u
- 60S ribosomal protein L37a
- Chain y
- 40S ribosomal protein S3a
Coloring options: