J3_8JDM_015

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CUG*UUCCG*CAAAG

Length

13 nucleotides

Bulged bases

8JDM|1|w|C|1138

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|w|C|1094
8JDM|1|w|U|1095
8JDM|1|w|G|1096
*
8JDM|1|w|U|1136
8JDM|1|w|U|1137
8JDM|1|w|C|1138
8JDM|1|w|C|1139
8JDM|1|w|G|1140
*
8JDM|1|w|C|1147
8JDM|1|w|A|1148
8JDM|1|w|A|1149
8JDM|1|w|A|1150
8JDM|1|w|G|1151

Current chains

Chain w

18S ribosomal RNA

Nearby chains

Chain AH

40S ribosomal protein S21

Chain AI

40S ribosomal protein S15a

Chain AM

40S ribosomal protein S26

Chain AN

40S ribosomal protein S27

Chain x

40S ribosomal protein SA