J3_8JDM_018
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- C(PSU)UAAUU(PSU)G*CGGGAAACCUCAC*GGCUG
- Length
- 27 nucleotides
- Bulged bases
- 8JDM|1|w|G|1256, 8JDM|1|w|A|1258, 8JDM|1|w|A|1260
- QA status
- Modified nucleotides: PSU
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDM|1|w|C|1237
8JDM|1|w|PSU|1238
8JDM|1|w|U|1239
8JDM|1|w|A|1240
8JDM|1|w|A|1241
8JDM|1|w|U|1242
8JDM|1|w|U|1243
8JDM|1|w|PSU|1244
8JDM|1|w|G|1245
*
8JDM|1|w|C|1254
8JDM|1|w|G|1255
8JDM|1|w|G|1256
8JDM|1|w|G|1257
8JDM|1|w|A|1258
8JDM|1|w|A|1259
8JDM|1|w|A|1260
8JDM|1|w|C|1261
8JDM|1|w|C|1262
8JDM|1|w|U|1263
8JDM|1|w|C|1264
8JDM|1|w|A|1265
8JDM|1|w|C|1266
*
8JDM|1|w|G|1516
8JDM|1|w|G|1517
8JDM|1|w|C|1518
8JDM|1|w|U|1519
8JDM|1|w|G|1520
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain AB
- 40S ribosomal protein S15
- Chain AC
- 40S ribosomal protein S16
- Chain AE
- 40S ribosomal protein S18
- Chain AG
- 40S ribosomal protein S20
- Chain AP
- 40S ribosomal protein S29
- Chain C
- Transfer RNA; tRNA
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