J3_8JDM_022

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CAAG*CCCAGCCCGUGGAC*GGUAG

Length

23 nucleotides

Bulged bases

8JDM|1|D|U|224

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|196
8JDM|1|D|A|197
8JDM|1|D|A|198
8JDM|1|D|G|199
*
8JDM|1|D|C|215
8JDM|1|D|C|216
8JDM|1|D|C|217
8JDM|1|D|A|218
8JDM|1|D|G|219
8JDM|1|D|C|220
8JDM|1|D|C|221
8JDM|1|D|C|222
8JDM|1|D|G|223
8JDM|1|D|U|224
8JDM|1|D|G|225
8JDM|1|D|G|226
8JDM|1|D|A|227
8JDM|1|D|C|228
*
8JDM|1|D|G|240
8JDM|1|D|G|241
8JDM|1|D|U|242
8JDM|1|D|A|243
8JDM|1|D|G|244

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain d

60S ribosomal protein L26