J3_8JDM_027

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CC*GAGGGAGCGAGACCCGUCGCCG*CACGGGG

Length

31 nucleotides

Bulged bases

8JDM|1|D|G|959, 8JDM|1|D|C|962, 8JDM|1|D|G|965, 8JDM|1|D|C|967, 8JDM|1|D|C|968, 8JDM|1|D|C|969, 8JDM|1|D|U|971, 8JDM|1|D|C|1280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|712
8JDM|1|D|C|713
*
8JDM|1|D|G|955
8JDM|1|D|A|956
8JDM|1|D|G|957
8JDM|1|D|G|958
8JDM|1|D|G|959
8JDM|1|D|A|960
8JDM|1|D|G|961
8JDM|1|D|C|962
8JDM|1|D|G|963
8JDM|1|D|A|964
8JDM|1|D|G|965
8JDM|1|D|A|966
8JDM|1|D|C|967
8JDM|1|D|C|968
8JDM|1|D|C|969
8JDM|1|D|G|970
8JDM|1|D|U|971
8JDM|1|D|C|972
8JDM|1|D|G|973
8JDM|1|D|C|974
8JDM|1|D|C|975
8JDM|1|D|G|976
*
8JDM|1|D|C|1278
8JDM|1|D|A|1279
8JDM|1|D|C|1280
8JDM|1|D|G|1281
8JDM|1|D|G|1282
8JDM|1|D|G|1283
8JDM|1|D|G|1284

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain I

60S ribosomal protein L4

Chain K

60S ribosomal protein L6

Chain L

60S ribosomal protein L7

Chain j

60S ribosomal protein L32