J3_8JDM_035

3D structure

PDB id

8JDM (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)

Experimental method

ELECTRON MICROSCOPY

Resolution

2.67 Å

Loop

Sequence

CA(PSU)*GCUUCU*AAGG

Length

13 nucleotides

Bulged bases

8JDM|1|D|U|4989, 8JDM|1|D|C|4990

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8JDM|1|D|C|4970
8JDM|1|D|A|4971
8JDM|1|D|PSU|4972
*
8JDM|1|D|G|4986
8JDM|1|D|C|4987
8JDM|1|D|U|4988
8JDM|1|D|U|4989
8JDM|1|D|C|4990
8JDM|1|D|U|4991
*
8JDM|1|D|A|5060
8JDM|1|D|A|5061
8JDM|1|D|G|5062
8JDM|1|D|G|5063

Current chains

Chain D

28S ribosomal RNA

Nearby chains

Chain H

60S ribosomal protein L3

Chain U

60S ribosomal protein L17

Chain i

60S ribosomal protein L31