J3_8JDM_045
3D structure
- PDB id
- 8JDM (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Structure of the Human cytoplasmic Ribosome with human tRNA Tyr(GalQ34) and mRNA(UAU) (rotated state)
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.67 Å
Loop
- Sequence
- (OMC)UGGC*GGACAAG*CCCGAGAUUG
- Length
- 22 nucleotides
- Bulged bases
- 8JDM|1|w|A|1454, 8JDM|1|w|U|1477
- QA status
- Modified nucleotides: OMC
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8JDM|1|w|OMC|1391
8JDM|1|w|U|1392
8JDM|1|w|G|1393
8JDM|1|w|G|1394
8JDM|1|w|C|1395
*
8JDM|1|w|G|1450
8JDM|1|w|G|1451
8JDM|1|w|A|1452
8JDM|1|w|C|1453
8JDM|1|w|A|1454
8JDM|1|w|A|1455
8JDM|1|w|G|1456
*
8JDM|1|w|C|1470
8JDM|1|w|C|1471
8JDM|1|w|C|1472
8JDM|1|w|G|1473
8JDM|1|w|A|1474
8JDM|1|w|G|1475
8JDM|1|w|A|1476
8JDM|1|w|U|1477
8JDM|1|w|U|1478
8JDM|1|w|G|1479
Current chains
- Chain w
- 18S ribosomal RNA
Nearby chains
- Chain 0
- 40S ribosomal protein S3
- Chain 2
- 40S ribosomal protein S5
- Chain AC
- 40S ribosomal protein S16
- Chain AD
- 40S ribosomal protein S17
- Chain AG
- 40S ribosomal protein S20
- Chain AO
- 40S ribosomal protein S28
- Chain AP
- 40S ribosomal protein S29
- Chain AR
- Receptor of activated protein C kinase 1
Coloring options: