J3_8K2A_008

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CUC*GCAGUAA*UGAACAG

Length

17 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|C|545
8K2A|1|S1|U|546
8K2A|1|S1|C|547
*
8K2A|1|S1|G|781
8K2A|1|S1|C|782
8K2A|1|S1|A|783
8K2A|1|S1|G|784
8K2A|1|S1|U|785
8K2A|1|S1|A|786
8K2A|1|S1|A|787
*
8K2A|1|S1|U|809
8K2A|1|S1|G|810
8K2A|1|S1|A|811
8K2A|1|S1|A|812
8K2A|1|S1|C|813
8K2A|1|S1|A|814
8K2A|1|S1|G|815

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m

Chain Sm

Small ribosomal subunit protein mS37