J3_8K2A_009

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

AGGA*UAC*GGAU

Length

11 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

J3_8K2A_009 not in the Motif Atlas

Homologous match to J3_5J7L_005

Geometric discrepancy: 0.1545

The information below is about J3_5J7L_005

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

J3_52655.4

Basepair signature

cWW-tSH-cWW-F-cWW-cWW

Number of instances in this motif group

4

Unit IDs

8K2A|1|S1|A|551
8K2A|1|S1|G|552
8K2A|1|S1|G|553
8K2A|1|S1|A|554
*
8K2A|1|S1|U|717
8K2A|1|S1|A|718
8K2A|1|S1|C|719
*
8K2A|1|S1|G|774
8K2A|1|S1|G|775
8K2A|1|S1|A|776
8K2A|1|S1|U|777

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SG

Small ribosomal subunit protein uS7m

Chain SI

Small ribosomal subunit protein uS9m