J3_8K2A_010

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

UGUAAUC*GAUCAACCUCAC*GCAA

Length

23 nucleotides

Bulged bases

8K2A|1|S1|U|582, 8K2A|1|S1|C|583

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|U|563
8K2A|1|S1|G|564
8K2A|1|S1|U|565
8K2A|1|S1|A|566
8K2A|1|S1|A|567
8K2A|1|S1|U|568
8K2A|1|S1|C|569
*
8K2A|1|S1|G|580
8K2A|1|S1|A|581
8K2A|1|S1|U|582
8K2A|1|S1|C|583
8K2A|1|S1|A|584
8K2A|1|S1|A|585
8K2A|1|S1|C|586
8K2A|1|S1|C|587
8K2A|1|S1|U|588
8K2A|1|S1|C|589
8K2A|1|S1|A|590
8K2A|1|S1|C|591
*
8K2A|1|S1|G|704
8K2A|1|S1|C|705
8K2A|1|S1|A|706
8K2A|1|S1|A|707

Current chains

Chain S1

12S rRNA

Nearby chains

Chain SJ

Small ribosomal subunit protein uS10m

Chain SN

Small ribosomal subunit protein uS14m