J3_8K2A_012

3D structure

PDB id

8K2A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the human 55S mitoribosome with Tigecycline

Experimental method

ELECTRON MICROSCOPY

Resolution

2.9 Å

Loop

Sequence

CAUUU*AACGAUAG*UCGAAGGUG

Length

22 nucleotides

Bulged bases

8K2A|1|S1|U|722, 8K2A|1|S1|U|744, 8K2A|1|S1|G|772

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8K2A|1|S1|C|719
8K2A|1|S1|A|720
8K2A|1|S1|U|721
8K2A|1|S1|U|722
8K2A|1|S1|U|723
*
8K2A|1|S1|A|735
8K2A|1|S1|A|736
8K2A|1|S1|C|741
8K2A|1|S1|G|742
8K2A|1|S1|A|743
8K2A|1|S1|U|744
8K2A|1|S1|A|745
8K2A|1|S1|G|746
*
8K2A|1|S1|U|766
8K2A|1|S1|C|767
8K2A|1|S1|G|768
8K2A|1|S1|A|769
8K2A|1|S1|A|770
8K2A|1|S1|G|771
8K2A|1|S1|G|772
8K2A|1|S1|U|773
8K2A|1|S1|G|774

Current chains

Chain S1

12S rRNA

Nearby chains

Chain Lv

Large ribosomal subunit protein mL48

Chain SG

Small ribosomal subunit protein uS7m

Chain Se

Small ribosomal subunit protein mS29